For those who may be interested, I finally found out what was happening. After working with NI and going back and forth, it was considered a glitch (apparently also happening in versions of LabView more recent than mine, 8.5). I discovered that putting anything on top of the chart (label, line decoration etc.) caused the problem. The lines and labels you see on my chart were added on top as decorations and lines. Removing them, resulted in perfect behavior.