Hi Richard,
I am one of the developers of the Simulation Translator, so hopefully I can offer some insight.
Have you installed the patch for the translator for the Simulation Module 2.0? It can be found here: http://digital.ni.com/softlib.nsf/websearc...62571250070D3EE
It should help with some of the broken wires, in particular. The subVIs just perform the correct selection operation, given the input indicies. They should not be password protected and I've filed a bug report to that effect.
HTH,
-Reed