Hi LogMAN,
I looked into this more and found a case where the patch did not fix the issue. I have tested with your specific case against our new fix, and I believe it should now be fixed. If you take the attached VI and replace the file at LabVIEW 2013vi.libAppBuilderEngineAB_Engine_Update_Source_from_Linker.vi with it, you should be able to build.
Please let me know if that doesn't work.
Thanks
AB_Engine_Update_Source_from_Linker.vi