For what it's worth, there is a private VI property that returns the OS window handle so you don't need to use FindWindow. It's somewhere on lava but I can't link to it via the mobile site. I think it's called OSNativeWindow or something. The thread has a VI containing the property node which can be dropped in any other VI (it's a private property). That should fix any issue with window titles not matching.
FindWindow has a lot of limitations, some of which include conflicts with other windows, or inability to find Windows without a title bar. I tend to use the property exclusively when I need an hWnd.